Publications
Protocols
- Nuclei Isolation from FFPE Tissue, S2 Genomics
- Nuclei Isolation and Cleanup from Frozen Mouse Brain Tissue for Single Nuclei Sequencing Applications, S2 Genomics
- Nuclei extraction for 10x Genomics Single Cell Multiome ATAC + Gene Expression from frozen tissue using Singulator™ 100 or 200 (S2 Genomics) V2.0, Memorial Sloan Kettering Cancer Center
- Tissue Dissociation for Multiome Analysis Using S2 Singulator, Stephen Fisher, University of Pennsylvania
- Nuclei extraction for single-cell RNAseq from frozen tissue using Singulator™ 100, Ignas Masilionis, Memorial Sloan Kettering Cancer Center
Presentations
- Markets and Markets 2021 Single Cell Analysis Conference: S2 Genomics – Automated Solid Tissue Dissociation for Single Cell ‘Omics Analyses
Publications
- Vaccine Therapy for Heart Failure Targeting the Inflammatory Cytokine Igfbp7
Katoh, M., et al., https://www.ahajournals.org/doi/10.1161/CIRCULATIONAHA.123.064719 - Multiplatform molecular profiling and functional genomic screens identify prognostic signatures and mechanisms underlying MEK inhibitor response in somatic NF1 mutant glioblastoma
Pan, S., et al., https://www.biorxiv.org/content/10.1101/2024.07.01.601334v1 - The covariance environment defines cellular niches for spatial inference
Haviv, D., et al., https://www.nature.com/articles/s41587-024-02193-4 - Transcript-specific enrichment enables profiling rare cell states via scRNA-seq
Abay, T., et al., https://www.biorxiv.org/content/10.1101/2024.03.27.587039v1 - PERFF-seq: Cell and Nuclei Preparation
Abay, T., et al., https://www.protocols.io/view/1-perff-seq-cell-and-nuclei-preparation-c8n3zvgn.html - Childhood cancer mutagenesis caused by transposase-derived PGBD5
Yamado, M., et al., https://www.science.org/doi/10.1126/sciadv.adn4649 - Kinase signalling in excitatory neurons regulates sleep quantity and depth
Kim, S.J., et al., https://www.nature.com/articles/s41586-022-05450-1 - Nuclei extraction for 10x Genomics Single Cell Multiome ATAC + Gene Expression from frozen tissue using Singulator™ 100 or 200 (S2 Genomics) V2.0
Masilionis, I., et al., https://www.protocols.io/view/nuclei-extraction-for-10x-genomics-single-cell-mul-b8wmrxc6.html - Atf3 controls transitioning in female mitochondrial cardiomyopathy as identified by single-cell transcriptomic
Qaqorh, T., et al. bioRxiv. posted 11 September 2023, http://biorxiv.org/content/early/2023/09/11/2023.09.11.557118 - Neuronal SNCA transcription during Lewy body formation
Kon, T., et al., bioRxiv. posted 20 August 2023, http://biorxiv.org/content/early/2023/08/20/2023.08.19. 553427 - Systematic Sampling of the Female Reproductive System for Molecular Characterization
Fisher, S.A., et al., https://doi.org/10.1002/cpz1.848 - A Simple, Quick, and Partially Automated Protocol for the Isolation of Single Nuclei from Frozen Mammalian Tissues for Single Nucleus Sequencing
Stadler, L., et al., https://www.jove.com/t/65611/a-simple-quick-partially-automated-protocol-for-isolation-single - Tissue-specific features of the T cell repertoire after allogeneic hematopoietic cell transplantation in human and mouse
Dewolf, S., et al., https://www.science.org/doi/10.1126/scitranslmed.abq0476 - Cell-specific MAPT gene expression is preserved in neuronal and glial tau cytopathologies in progressive supranuclear palsy
Forrest, S.L., Lee, S., Nassir, N. et al., Acta Neuropathol (2023). https://link.springer.com/article/10.1007/s00401-023-02604-x - Single substitution in H3.3G34 alters DNMT3A recruitment to cause progressive neurodegeneration
Khazaei et al., https://www.sciencedirect.com/science/article/abs/pii/S0092867423001666 - Application of high-throughput, high-depth, targeted single-nucleus DNA sequencing in pancreatic cancer
Zhang, H. et al., https://www.nature.com/articles/s41467-023-36344-z - Single nuclei profiling identifies cell specific markers of skeletal muscle aging, frailty, and senescence
Perez K. et al., https://www.aging-us.com/article/204435 - K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas
Selin J. et al., https://www.nature.com/articles/s41588-022-01205-w - Single-cell analyses reveal a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer
Becker, W.R., Nevins S.A. et al., https://www.nature.com/articles/s41588-022-01088-x - Comprehensive characterization of the transcriptional response to COVID-19 in multiple organs reveals shared signatures across tissues
The COVID Tissue Atlas Consortium, et. al., doi: https://www.biorxiv.org/content/10.1101/2022.05.31.493925v1
Posters
- Automated Preparation of Single Nuclei from FFPE Samples for snRNA-Seq – AACR 24
- Integrated Sample Preparation Pipeline for scRNA-Seq and snRNA-Seq Utilizing the S2 Genomics Singulator™ Tissue Dissociation Platform and Parse Biosciences Evercode™ Whole Transcriptome Assay – Cell Symposia 2023
- Impact of Nuclei Isolation Methods on snRNA-Seq – Memorial Sloan Kettering Cancer Center / Single-cell Analytics Innovation Lab
- Comparison of polydT and probe-based RNA capture for single-cell RNAseq – Memorial Sloan Kettering Cancer Center / Single-cell Analytics Innovation Lab
- Automated Dissociation of FFPE Samples for Single Nuclei RNA-Seq – Keystone Symposia 2023
- Nuclei Isolation from Immature Embryos of Wild Sorghum purpureosericeum with the Singulator™ 100 system – PAG30
- Automated processing of solid tissues into single cells or nuclei for genomics and cell biology applications with the Singulator™ 100 and 200 systems – AGBT 2022
- Automated Processing of Solid Tissues into Single Cells or Nuclei with the Singulator™ 100 system: scRNA-Seq, and ATAC-Seq Data on Human and Mouse Tissues – AGBT 2022
- Improving Single Cell Workflows Using the Singulator 100 – Michael Peterson, Allison Scott, Cathleen Lake, Lu Deng, Anoja Perera, The Stowers Institute for Medical Research
- Automated Dissociation of Solid Tissue Into Cells or Nuclei for Single Cell Analysis – 2021 Keystone Single Cell Conference
- Automated processing of solid tissues into single cells or nuclei for sequencing – AGBT 2020
